Archive: Simple tasks in genomics

Budget By arrangement

Posted: 5 years ago

Closed

Description: Task1
Say we have a conserved region, 1kb long
http://bit.ly/30VvnAp

We need to download the sequences from multiple species for this region which were used to measure this conservation.
We need this to produce an alignment of the sequences
http://bit.ly/2W1sWZy

and to measure which bases are replaced at which rates. Once the sequences are downloaded, we can do the counts, but we need help downloading them. I found a way to download the whole dataset, but it is huge. We need just 1kb in time for say 20-100 species.
We need you to download the sequences for us or teach us how to do that.

Task2
Say we have a region 10 kb long
http://bit.ly/2W4Vy43

There is a track of SINEs,
this track contains various Alu sequences (they have variations).
We need to download these sequences.
We need you to download the sequences for us or teach us how to do that.

Offer your pricing.
With time we will have many more genomics requests of a similar kind.
Working conditions:
6+ months
1-10 Hours/wk
Rate: not specified
W9 Required for U.S.
Skills:
genomics,computational genomics